pyft
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pyft
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API Reference
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pyft
Index
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Index
A
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B
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C
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E
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F
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G
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H
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L
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M
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N
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O
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P
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Q
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R
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S
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U
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W
A
aligned_block_pairs (pyft.Fiberdata attribute)
B
Basemods (class in pyft)
C
center() (pyft.Fiberbam method)
chrom (pyft.Fiberdata attribute)
cpg (pyft.Fiberdata attribute)
E
ec (pyft.Fiberdata attribute)
empty_data_dict() (in module utils)
end (pyft.Fiberdata attribute)
ends (pyft.Ranges attribute)
F
fetch() (pyft.Fiberbam method)
Fiberbam (class in pyft)
Fiberdata (class in pyft)
Fiberwriter (class in pyft)
footprint_code_to_vec() (in module utils)
G
get_ends() (pyft.Basemods method)
get_reference_ends() (pyft.Basemods method)
get_seq_length() (pyft.Fiberdata method)
H
hp (pyft.Fiberdata attribute)
L
lengths (pyft.Ranges attribute)
lift_query_positions() (pyft.Fiberdata method)
lift_reference_positions() (pyft.Fiberdata method)
M
m6a (pyft.Fiberdata attribute)
ml (pyft.Basemods attribute)
module
pyft
utils
msp (pyft.Fiberdata attribute)
N
nuc (pyft.Fiberdata attribute)
O
offset (pyft.Fiberdata attribute)
P
pyft
module
Q
qname (pyft.Fiberdata attribute)
qual (pyft.Ranges attribute)
R
Ranges (class in pyft)
read_and_center_footprint_table() (in module utils)
read_center_table() (in module utils)
read_footprint_table() (in module utils)
reference_ends (pyft.Ranges attribute)
reference_lengths (pyft.Ranges attribute)
reference_starts (pyft.Basemods attribute)
(pyft.Ranges attribute)
region_to_centered_df() (in module utils)
region_to_df() (in module utils)
rg (pyft.Fiberdata attribute)
rq (pyft.Fiberdata attribute)
S
sam_flag (pyft.Fiberdata attribute)
seq (pyft.Fiberdata attribute)
start (pyft.Fiberdata attribute)
starts (pyft.Basemods attribute)
(pyft.Ranges attribute)
strand (pyft.Fiberdata attribute)
U
utils
module
W
write() (pyft.Fiberwriter method)
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